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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30196271_30196849_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30196271 - 30196849
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
TCATACTTACTT
Flanking Amino Acid:
SDLEVNEGSKNATGRQHFRS
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
76.1
0.59
0.9
77.7
31.2
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
57.2
0.3
1.8
73.52
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011451
30190596 - 30214680
24085