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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30198743_30199835_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30198743 - 30199835
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
CCTTCCTTCACA
Flanking Amino Acid:
DFERVLGNKIRAMMAHLSAT
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
73.3
36.4
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
80.9
0.7
0.7
75.2
26.9
Minor 5ss
33.6
-1.9
3.7
49.4
47.1
Minor BPS
68.8
0.59
1.8
74.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011451
30190596 - 30214680
24085