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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30199912_30200948_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30199912 - 30200948
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCCTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
AATTGTTCACCT
Flanking Amino Acid:
ARLFQKQLIQMCKGPVGGGA
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.3
33.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
67.9
0.4
1
68.2
32.4
Minor 5ss
38.9
-1.2
2.9
48.7
47.5
Minor BPS
46.3
-0.2
2.1
67.52
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011451
30190596 - 30214680
24085