Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30202959_30203630_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30202959 - 30203630

Intron Length:

672

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

CTTGTTCATTAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

TCTGTTTTAACT

Flanking Amino Acid:

QDSAVALRNQTLPVLDVLKL

Intron Amino Acid Position:

838

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

77.9

29.9

Major BPS

89.7

0.98

0.7

89.9

Major PPT

68.3

0.41

1.1

72.4

37.2

Minor 5ss

35.5

-1.6

44.2

37.3

Minor BPS

72.1

0.77

1.3

82.56

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010970

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011451

30190596 - 30214680

24085