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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30205245_30206151_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30205245 - 30206151
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTTTCCTTCATT
Flanking Amino Acid:
VDTVTSAQALDSVPLVDQQL
Intron Amino Acid Position:
951

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.5
Major BPS
75
0.62
1.1
77.2
36
Major PPT
78.2
0.64
0.9
71.7
38.7
Minor 5ss
34.2
-1.8
2.8
37
41.8
Minor BPS
79.8
1.02
1.6
95.75
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011451
30190596 - 30214680
24085