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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30208978_30209433_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30208978 - 30209433
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGGAGG
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTAACTAATACT
Flanking Amino Acid:
EGAQALIKGREFCKKKGPEA
Intron Amino Acid Position:
1098

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
58
46.6
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
32.9
-1.9
3.1
36.2
41.7
Minor BPS
43.7
-0.4
2.2
66.47
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011451
30190596 - 30214680
24085