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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30209498_30209993_F

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30209498 - 30209993
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
CCTCCCTGCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CACTTCTTATCC
Flanking Amino Acid:
VLLPEETSAAVLNSAEDIAV
Intron Amino Acid Position:
1120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
77.6
36.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
57.7
0.17
1
58.1
30.7
Minor 5ss
50
-0
2.5
74.1
35.5
Minor BPS
57.8
0.22
1.6
62.54
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011451
30190596 - 30214680
24085