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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30211222_30211356_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30211222 - 30211356
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAAT
5'SS Class:
major
3'SS Sequence:
CTCTTTCATCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GTCTCTTTCATC
Flanking Amino Acid:
FPSQIINEIKDVLCVAVGPR
Intron Amino Acid Position:
1199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
80.5
33.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
69
0.43
1.1
68
37
Minor 5ss
35.7
-1.6
3.1
50.7
45.8
Minor BPS
58
0.23
1.7
66.24
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011451
30190596 - 30214680
24085