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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30211880_30213016_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30211880 - 30213016
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TTGCTTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAC
U12 Branch Point Sequence:
TGGAAGTTCACC
Flanking Amino Acid:
KCTVELASLLVSDRVPLSVG
Intron Amino Acid Position:
1256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.9
42.8
Major BPS
66.1
0.4
1.1
69.1
37.9
Major PPT
80.8
0.69
0.8
80.7
31.3
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
40.8
-0.7
2.5
52.7
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011451
30190596 - 30214680
24085