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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30214008_30214554_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30214008 - 30214554
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
GTATCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGCCAATAAAG
Flanking Amino Acid:
RSLRELPWPSDFLKELEMLS
Intron Amino Acid Position:
1360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.7
0.58
1
69.3
41.5
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
46.4
-0.4
2
56.94
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010970
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011451
30190596 - 30214680
24085