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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30221649_30221999_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30221649 - 30221999
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTGC
5'SS Class:
major
3'SS Sequence:
TTCTCACATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTTCTTTACAC
Flanking Amino Acid:
FCCITVEAKEENLSVLAIQS
Intron Amino Acid Position:
2628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66.5
40.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76.3
0.59
0.9
70.7
34
Minor 5ss
43.5
-0.7
3
59.3
45.5
Minor BPS
61.1
0.33
1.7
70.99
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017853
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039405
30219933 - 30239775
19843
ENSAPLT00000022433
30219933 - 30239588
19656