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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30222708_30222794_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30222708 - 30222794
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTGTTTGACA
Flanking Amino Acid:
LYMCQAAGGWKYQCTEKEVL
Intron Amino Acid Position:
2532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
100
1.24
0.5
100
0
Major PPT
75.7
0.58
1.1
72.2
42.7
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
62.2
0.38
1.8
73.66
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017853
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039405
30219933 - 30239775
19843
ENSAPLT00000022433
30219933 - 30239588
19656