Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30227790_30228619_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30227790 - 30228619

Intron Length:

830

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTAC

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTCTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

GTTTCTCTGACA

Flanking Amino Acid:

AIPVKQQLYERHMRTIETLR

Intron Amino Acid Position:

2251

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.88

0.9

80.8

Major BPS

82.2

0.8

0.9

81.6

Major PPT

76.7

0.6

72.7

37.6

Minor 5ss

39.8

-1.1

2.9

45.2

Minor BPS

64.1

0.44

1.6

76.06

34.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017853

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039405

30219933 - 30239775

19843

ENSAPLT00000022433

30219933 - 30239588

19656