About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30235336_30239552_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30235336 - 30239552
Intron Length:
4217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTCCT
5'SS Class:
major
3'SS Sequence:
AAACTTTGACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AATTGCTTACCC
Flanking Amino Acid:
PGMMTLMMKKENKVSGCEVT
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.2
66.5
44.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
59.1
0.21
1.1
51.8
45.9
Minor 5ss
41.3
-1
3.1
60.4
43.9
Minor BPS
56.7
0.19
2
69.89
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017853
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022433
30219933 - 30239588
19656