Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30244802_30251962_R

Intron Information:

Intron Rank:

131584

Intron Class:

major

Intron Phase:

Intron Coordinates:

30244802 - 30251962

Intron Length:

7161

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

ACATTTCTAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

AATTCATTATCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.7

23.7

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

71.4

0.48

66.3

38.8

Minor 5ss

32.8

-2

2.9

39.7

45.8

Minor BPS

60.2

0.31

1.9

72.71

38.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044231

30243132 - 30252066

8935