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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30263872_30265181_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30263872 - 30265181
Intron Length:
1310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCAATGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTTTCCAATA
Flanking Amino Acid:
NIINKPRVNEDANVRLIREL
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.7
0.51
1
68.6
41.7
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
53.2
0.1
1.8
71.6
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040829
30262846 - 30311105
48260