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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30265280_30265680_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30265280 - 30265680
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
TTTCTATCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTCTTTTAAAT
Flanking Amino Acid:
GGNSKTIMIATISPASSSYN
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.1
59.8
41.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.8
0.83
0.7
81.8
28.9
Minor 5ss
44.2
-0.6
3
61.1
44.5
Minor BPS
65
0.55
1.4
77.95
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040829
30262846 - 30311105
48260