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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30265882_30266093_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30265882 - 30266093
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ATTTCCTGAGCT
Flanking Amino Acid:
VTLGIVISTLAQNSQMFSSC
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
85.1
0.79
0.7
82.3
28.9
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
69.7
0.7
1.7
87.92
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040829
30262846 - 30311105
48260