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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30267479_30268401_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30267479 - 30268401
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCTAA
5'SS Class:
major
3'SS Sequence:
GTTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTCCTTATTT
Flanking Amino Acid:
HAIFTIHYTQAILENNLPSE
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
72.3
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.5
0.91
0.7
89
28.1
Minor 5ss
39.5
-1.2
2.8
47.4
48
Minor BPS
75.3
0.87
1.5
87.57
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040829
30262846 - 30311105
48260