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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30268475_30271035_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30268475 - 30271035
Intron Length:
2561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
CTCTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TGTAATTGAATG
Flanking Amino Acid:
VELLEEGIAKRITAATHIHN
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
48.1
-0.2
1.7
54.96
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040829
30262846 - 30311105
48260