About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30275606_30276207_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30275606 - 30276207
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
GTGCACTTAACA
Flanking Amino Acid:
DQTASCRVKVSFLEIYNERV
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
90.8
0.92
0.7
88.7
28.3
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
65.2
0.47
1.5
71.14
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025892
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040829
30262846 - 30311105
48260