About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30327165_30327283_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30327165 - 30327283
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TAAAATCTAATT
Flanking Amino Acid:
PQIPTLMKNVDVALTKTEVL
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
89.7
0.89
0.6
88.5
21.1
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
47.3
-0.1
1.8
64.86
39.2

Associated Gene:

Gene:
HAUS2
Ensembl Gene ID:
ENSAPLG00000011894
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012377
30326598 - 30330742
4145