About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30328820_30330130_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30328820 - 30330130
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGCCT
5'SS Class:
major
3'SS Sequence:
TTTATTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATTTTGATT
Flanking Amino Acid:
IAKIRAEINEKKLETEILQL
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
60.5
44
Major BPS
100
1.24
0.5
100
0
Major PPT
85.7
0.8
0.7
81.7
30.2
Minor 5ss
31.7
-2.1
3.6
48.5
47.2
Minor BPS
61.3
0.44
1.2
74.39
37.2

Associated Gene:

Gene:
HAUS2
Ensembl Gene ID:
ENSAPLG00000011894
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012377
30326598 - 30330742
4145