Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30330224_30330487_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30330224 - 30330487

Intron Length:

264

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCGGGGC

5'SS Class:

major

3'SS Sequence:

CTTGCTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

CTTGCTTTCACA

Flanking Amino Acid:

ECLAEGFVTQETLDSACQNI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

59.7

39.4

Major BPS

66.3

0.4

1.1

41.8

Major PPT

80.9

0.7

0.8

75.4

33.1

Minor 5ss

23.1

-3.1

3.4

32.1

42.7

Minor BPS

58.1

0.25

1.9

70.26

42.8

Associated Gene:

Gene:

HAUS2

Ensembl Gene ID:

ENSAPLG00000011894

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012377

30326598 - 30330742

4145