About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30331662_30332338_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30331662 - 30332338
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TTCTCTCTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTTAGATGATCT
Flanking Amino Acid:
FQLTGKGLTEFPEDLQKLTS
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
79.2
0.72
1
75
40
Major PPT
79.6
0.67
0.7
73.3
31.7
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
44.2
-0.3
2.3
71.13
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011995
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012481
30331578 - 30335097
3520