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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30332475_30333557_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
30332475 - 30333557
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGCCTG
5'SS Class:
weak_major
3'SS Sequence:
GATTTACTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TGTTCTGTGATT
Flanking Amino Acid:
KSLVLNNNKLTALPEELCKL
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60
0.24
1.1
50
46.5
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
72.9
0.52
0.9
63.6
42.8
Minor 5ss
48.8
-0.1
2.7
61.2
44.4
Minor BPS
57.6
0.32
2
79.17
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011995
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012481
30331578 - 30335097
3520