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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30333827_30334303_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30333827 - 30334303
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGGTAA
5'SS Class:
major
3'SS Sequence:
TTATTTCTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TCTTTCTTAAAT
Flanking Amino Acid:
AIELNLNQNQISQISVQISH
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.3
64.5
37.9
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
80.6
0.69
0.9
74.9
39.6
Minor 5ss
37.5
-1.4
3.1
46.7
48.7
Minor BPS
78.5
0.97
1.3
88.72
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011995
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012481
30331578 - 30335097
3520