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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30341894_30344483_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30341894 - 30344483
Intron Length:
2590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GACCTATGAATT
Flanking Amino Acid:
NKQIDRINVKADTNRDRIEQ
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
89.8
0.89
0.7
88.4
28.7
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
45.7
-0.2
1.6
57.41
38.8

Associated Gene:

Gene:
SNAP23
Ensembl Gene ID:
ENSAPLG00000012006
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012518
30341828 - 30349121
7294