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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30367512_30372741_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30367512 - 30372741
Intron Length:
5230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
CAGAATTGAAAG
Flanking Amino Acid:
HHRELENLKGRDSNHECQVC
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73
31.2
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
75.7
0.58
0.7
68.6
31.7
Minor 5ss
35.8
-1.6
3.3
46.4
48.9
Minor BPS
40.6
-0.8
1.6
36.51
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025882
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041686
30366097 - 30377445
11349