About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30381541_30381636_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30381541 - 30381636
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGTA
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTGATTTAAAT
Flanking Amino Acid:
VQRFLVLKQQITMEMSTLRS
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
75.2
35.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
95.3
1.02
0.5
91.7
19.4
Minor 5ss
39.6
-1.2
3.5
56
48.2
Minor BPS
58.4
0.34
1.7
76.56
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012132
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012675
30377930 - 30393228
15299