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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30384100_30384584_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30384100 - 30384584
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATATCTT
5'SS Class:
major
3'SS Sequence:
CTCTATCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
GTTTCTCTATCC
Flanking Amino Acid:
SSLRGSKNSSEVSSEPGEDE
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
69.5
40.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
79.4
0.66
0.8
73.2
31.3
Minor 5ss
45.7
-0.4
3
64
42.7
Minor BPS
55.6
0.16
1.9
71.84
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012132
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012675
30377930 - 30393228
15299