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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30384731_30385185_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30384731 - 30385185
Intron Length:
455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
CTTTGCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TTTAGTTTGACA
Flanking Amino Acid:
DKTVCAYNLVSRKCVAIFEG
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
72.7
38.2
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
81.2
0.7
0.8
73.4
37.1
Minor 5ss
37.6
-1.4
2.8
48.4
41.7
Minor BPS
60.2
0.31
1.8
74.84
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012132
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012675
30377930 - 30393228
15299