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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30385321_30386192_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30385321 - 30386192
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCAAA
5'SS Class:
major
3'SS Sequence:
TTTCTATTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
CTTTCAATAATT
Flanking Amino Acid:
DHTINCYNIKTKECMEQFKL
Intron Amino Acid Position:
788

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
67.2
39.8
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
79.2
0.66
1
73.7
40.8
Minor 5ss
37.7
-1.4
3.1
48.8
47
Minor BPS
60.9
0.42
1.9
82.17
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012132
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012675
30377930 - 30393228
15299