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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30388984_30389739_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30388984 - 30389739
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTCTCTGCATT
Flanking Amino Acid:
DQSVHAHNIHTGELVRIYKG
Intron Amino Acid Position:
912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.8
0.58
1
71.7
38.2
Minor 5ss
41.2
-1
3.1
58.3
39.3
Minor BPS
48.7
-0
1.9
70.72
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012132
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012675
30377930 - 30393228
15299