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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30389860_30390324_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30389860 - 30390324
Intron Length:
465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
ATGCCATTAAAT
Flanking Amino Acid:
DKFVRVYELQSHDRLQVYGG
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
77.3
0.61
1
75.7
38.5
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
58.5
0.34
1.7
75
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012132
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012675
30377930 - 30393228
15299