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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30400536_30401720_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30400536 - 30401720
Intron Length:
1185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTGC
5'SS Class:
major
3'SS Sequence:
ACTCTCCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGATCTTTAATT
Flanking Amino Acid:
DGIIKLNVLEWLQLTMYA*
Intron Amino Acid Position:
804

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66.5
40.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.3
0.66
0.8
69.8
36
Minor 5ss
43.5
-0.7
3
59.3
45.5
Minor BPS
78.9
0.99
1.1
85.56
34.5

Associated Gene:

Gene:
CAPN3
Ensembl Gene ID:
ENSAPLG00000012454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013153
30400509 - 30427555
27047