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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30401780_30402141_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30401780 - 30402141
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TCCATTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
CCFVRLDAMFRAFHAFDKDG
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1
60.7
38.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.8
0.51
0.9
64.9
41.2
Minor 5ss
29.8
-2.3
3.2
40.1
40
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
CAPN3
Ensembl Gene ID:
ENSAPLG00000012454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013153
30400509 - 30427555
27047