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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30406409_30407066_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30406409 - 30407066
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGCAATTAATG
Flanking Amino Acid:
RNIFQQIAGDDMEINAEELR
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.3
0.62
0.9
70.7
39.6
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
49.8
-0.1
1.9
59.28
42.3

Associated Gene:

Gene:
CAPN3
Ensembl Gene ID:
ENSAPLG00000012454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013153
30400509 - 30427555
27047