About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30407145_30408429_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30407145 - 30408429
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTCTGCA
5'SS Class:
major
3'SS Sequence:
TTTATCTTGTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGCTTTTATCT
Flanking Amino Acid:
GDKTLRDEKKRHSAKAREEN
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.5
0.27
1.3
59.8
39.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.9
0.7
1
81.2
36.4
Minor 5ss
41
-1
2.8
51.4
45
Minor BPS
60.2
0.4
1.6
76.49
40.6

Associated Gene:

Gene:
CAPN3
Ensembl Gene ID:
ENSAPLG00000012454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013153
30400509 - 30427555
27047