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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30408532_30409780_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30408532 - 30409780
Intron Length:
1249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TAATTTCCACTT
Flanking Amino Acid:
DRPSKKKKGKPIIFVSDRAN
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.5
33.9
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
80.5
0.69
0.7
73.3
31.7
Minor 5ss
31.5
-2.1
3
42.7
44.3
Minor BPS
41.8
-0.5
1.9
58.28
39.1

Associated Gene:

Gene:
CAPN3
Ensembl Gene ID:
ENSAPLG00000012454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013153
30400509 - 30427555
27047