Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30413213_30413765_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30413213 - 30413765

Intron Length:

553

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCAAT

5'SS Class:

strong_major

3'SS Sequence:

TGGCATTTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TGGCATTTCACA

Flanking Amino Acid:

CSAGGCRNYPDTFWTNPQYR

Intron Amino Acid Position:

446

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.8

83.1

30.9

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

71.1

0.47

64.3

41.2

Minor 5ss

35.6

-1.6

47.8

47.9

Minor BPS

47.1

-0.2

1.9

58.37

41.1

Associated Gene:

Gene:

CAPN3

Ensembl Gene ID:

ENSAPLG00000012454

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013153

30400509 - 30427555

27047