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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30413927_30414380_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30413927 - 30414380
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTCCCCTCATTT
Flanking Amino Acid:
QHKIAEDGEFWISFEDFMRH
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
78.6
29.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
81.9
0.72
0.8
73.8
36.7
Minor 5ss
31.8
-2.1
3
37.3
41.2
Minor BPS
53.7
0.19
1.8
73.65
43.4

Associated Gene:

Gene:
CAPN3
Ensembl Gene ID:
ENSAPLG00000012454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013153
30400509 - 30427555
27047