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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30415790_30418645_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30415790 - 30418645
Intron Length:
2856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTTTGTACA
5'SS Class:
major
3'SS Sequence:
CTGTGTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGTGTTTAACA
Flanking Amino Acid:
YQGTDERPAWTIVPMQYETR
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
65.4
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.7
0.53
1
69
40.8
Minor 5ss
38
-1.4
2.3
36.6
40
Minor BPS
62.5
0.39
1.8
70.38
42.6

Associated Gene:

Gene:
CAPN3
Ensembl Gene ID:
ENSAPLG00000012454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013153
30400509 - 30427555
27047