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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30418787_30419432_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30418787 - 30419432
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTCCA
5'SS Class:
major
3'SS Sequence:
TTCTCTGTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
CCACACTGAACT
Flanking Amino Acid:
RGSLMASSIDDNLGFSYGSA
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
69.7
36.3
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
81.4
0.71
0.8
80
32
Minor 5ss
31.5
-2.1
2.9
38.2
39.5
Minor BPS
49.8
0.07
1.7
64.52
45

Associated Gene:

Gene:
CAPN3
Ensembl Gene ID:
ENSAPLG00000012454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013153
30400509 - 30427555
27047