About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30421946_30427261_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30421946 - 30427261
Intron Length:
5316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTGTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TACTTCTCAATC
Flanking Amino Acid:
PIKFEWKRPREICENPRFII
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
74.4
36.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
85.7
0.8
0.8
80.1
37.1
Minor 5ss
38
-1.4
2.8
46.6
41.8
Minor BPS
61.6
0.34
1.5
67.21
38.7

Associated Gene:

Gene:
CAPN3
Ensembl Gene ID:
ENSAPLG00000012454
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013153
30400509 - 30427555
27047