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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30433453_30434438_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30433453 - 30434438
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATCA
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTAAATAATT
Flanking Amino Acid:
FTFHKNILSSSCMCESGQYH
Intron Amino Acid Position:
844

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.4
35.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
93.1
0.97
0.6
92
18.6
Minor 5ss
43.8
-0.7
2.9
57.7
46.5
Minor BPS
50.9
0.11
2
76.97
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015742
30432387 - 30452828
20442