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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30435113_30435263_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30435113 - 30435263
Intron Length:
151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAA
U12 Branch Point Sequence:
ACCTTTCTACCC
Flanking Amino Acid:
TLKIPVTLDNIPVFQRGGTV
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
72.9
34.5
Major BPS
63.3
0.33
1.2
55.1
42.1
Major PPT
82.2
0.72
1
80.6
37
Minor 5ss
47
-0.3
2.4
56.4
42
Minor BPS
44.9
-0.4
1.8
51.94
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015742
30432387 - 30452828
20442