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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30435339_30436338_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30435339 - 30436338
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTTCATT
Flanking Amino Acid:
VSVLLPGSEEIWYDFRTFIR
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
100
1.24
0.5
100
0
Major PPT
80.7
0.69
0.8
80.7
31.1
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
61.3
0.44
1.7
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015742
30432387 - 30452828
20442