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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30436416_30436681_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30436416 - 30436681
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTACTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTATCTTTTACT
Flanking Amino Acid:
TFGVENEYMLGNALLVHPVT
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.7
0.8
0.8
78.1
35
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
74.3
0.85
1.5
88.85
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015742
30432387 - 30452828
20442