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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_30436747_30437719_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30436747 - 30437719
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
ACTAACTGAATT
Flanking Amino Acid:
RAHTVAEPVMRPLWVEFPGK
Intron Amino Acid Position:
696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
85.9
0.81
0.8
80.9
31.1
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
52.8
0.17
1.7
69.32
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015742
30432387 - 30452828
20442